HL_5HCR_190
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HCR_190 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0804
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5HCR|1|2a|C|673
5HCR|1|2a|G|674
5HCR|1|2a|G|675
5HCR|1|2a|U|676
5HCR|1|2a|G|677
5HCR|1|2a|A|678
5HCR|1|2a|A|679
5HCR|1|2a|A|680
5HCR|1|2a|U|681
5HCR|1|2a|G|682
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
- Chain 2v
- mRNA
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