HL_5HCR_196
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 5HCR|1|2a|G|949
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HCR_196 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0931
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|2a|G|941
5HCR|1|2a|A|942
5HCR|1|2a|A|943
5HCR|1|2a|G|944
5HCR|1|2a|C|945
5HCR|1|2a|A|946
5HCR|1|2a|A|947
5HCR|1|2a|C|948
5HCR|1|2a|G|949
5HCR|1|2a|C|950
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2m
- 30S ribosomal protein S13
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2x
- Transfer RNA; tRNA
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