HL_5HD1_122

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

5HD1|1|2A|C|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_122 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0687

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5HD1|1|2A|U|588
5HD1|1|2A|A|589
5HD1|1|2A|U|590
5HD1|1|2A|U|591
5HD1|1|2A|G|592
5HD1|1|2A|A|593
5HD1|1|2A|A|594
5HD1|1|2A|G|595
5HD1|1|2A|C|596
5HD1|1|2A|A|597

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2P

50S ribosomal protein L15

Chain 2V

50S ribosomal protein L21