HL_5HKV_034

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_034 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.15

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5HKV|1|X|C|1400
5HKV|1|X|G|1401
5HKV|1|X|A|1402
5HKV|1|X|C|1403
5HKV|1|X|A|1404
5HKV|1|X|G|1405

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain U

50S ribosomal protein L28