HL_5I4L_091

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.182

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5I4L|1|2|A|829
5I4L|1|2|U|830
5I4L|1|2|U|831
5I4L|1|2|U|832
5I4L|1|2|U|833
5I4L|1|2|G|834
5I4L|1|2|U|835
5I4L|1|2|U|836
5I4L|1|2|G|837
5I4L|1|2|G|838
5I4L|1|2|U|839
5I4L|1|2|U|840
5I4L|1|2|U|841
5I4L|1|2|C|842
5I4L|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A