HL_5I4L_098

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5I4L|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_098 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.0906

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5I4L|1|2|G|1188
5I4L|1|2|A|1189
5I4L|1|2|C|1190
5I4L|1|2|U|1191
5I4L|1|2|C|1192
5I4L|1|2|A|1193
5I4L|1|2|A|1194
5I4L|1|2|C|1195
5I4L|1|2|A|1196
5I4L|1|2|C|1197

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D0

40S ribosomal protein S20

Chain D9

40S ribosomal protein S29-A

Chain SM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1