HL_5I4L_193

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5I4L|1|6|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_193 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0616

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5I4L|1|6|G|330
5I4L|1|6|A|331
5I4L|1|6|U|332
5I4L|1|6|A|333
5I4L|1|6|G|334
5I4L|1|6|U|335
5I4L|1|6|G|336
5I4L|1|6|G|337
5I4L|1|6|C|338

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s8

40S ribosomal protein S8-A