HL_5I4L_246

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_246 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.3638

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89346.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5I4L|1|2|A|1691
5I4L|1|2|G|1692
5I4L|1|2|A|1693
5I4L|1|2|A|1694
5I4L|1|2|G|1695
5I4L|1|2|G|1696
5I4L|1|2|G|1697
5I4L|1|2|G|1698
5I4L|1|2|G|1699
5I4L|1|2|C|1700
5I4L|1|2|A|1701
5I4L|1|2|A|1702
5I4L|1|2|C|1703
5I4L|1|2|U|1704
5I4L|1|2|C|1705
5I4L|1|2|C|1706
5I4L|1|2|A|1707
5I4L|1|2|U|1708
5I4L|1|2|C|1709
5I4L|1|2|U|1710

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A