HL_5IB7_097

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5IB7|1|14|A|2750, 5IB7|1|14|G|2751, 5IB7|1|14|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_097 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.2504

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5IB7|1|14|C|2745
5IB7|1|14|U|2746
5IB7|1|14|G|2747
5IB7|1|14|A|2748
5IB7|1|14|A|2749
5IB7|1|14|A|2750
5IB7|1|14|G|2751
5IB7|1|14|C|2752
5IB7|1|14|A|2753
5IB7|1|14|U|2754
5IB7|1|14|C|2755
5IB7|1|14|U|2756
5IB7|1|14|A|2757
5IB7|1|14|A|2758
5IB7|1|14|G|2759

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6