HL_5IB8_076

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5IB8|1|14|A|1780, 5IB8|1|14|C|1781, 5IB8|1|14|C|1782, 5IB8|1|14|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_076 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0598

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5IB8|1|14|U|1777
5IB8|1|14|U|1778
5IB8|1|14|U|1779
5IB8|1|14|A|1780
5IB8|1|14|C|1781
5IB8|1|14|C|1782
5IB8|1|14|A|1783
5IB8|1|14|A|1784
5IB8|1|14|A|1785
5IB8|1|14|A|1786
5IB8|1|14|A|1787

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34