HL_5IBB_076

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5IBB|1|14|A|1780, 5IBB|1|14|C|1781, 5IBB|1|14|C|1782, 5IBB|1|14|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_076 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0543

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5IBB|1|14|U|1777
5IBB|1|14|U|1778
5IBB|1|14|U|1779
5IBB|1|14|A|1780
5IBB|1|14|C|1781
5IBB|1|14|C|1782
5IBB|1|14|A|1783
5IBB|1|14|A|1784
5IBB|1|14|A|1785
5IBB|1|14|A|1786
5IBB|1|14|A|1787

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34