HL_5IMQ_021
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_021 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.1714
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5IMQ|1|A|C|689
5IMQ|1|A|G|690
5IMQ|1|A|G|691
5IMQ|1|A|U|692
5IMQ|1|A|G|693
5IMQ|1|A|A|694
5IMQ|1|A|A|695
5IMQ|1|A|A|696
5IMQ|1|A|U|697
5IMQ|1|A|G|698
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S11
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