HL_5IMQ_097

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5IMQ|1|D|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_097 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.2258

The information below is about HL_7A0S_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5IMQ|1|D|U|2528
5IMQ|1|D|G|2529
5IMQ|1|D|A|2530
5IMQ|1|D|A|2531
5IMQ|1|D|G|2532
5IMQ|1|D|A|2533
5IMQ|1|D|A|2534
5IMQ|1|D|G|2535

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain B

Elongation factor 4

Chain e

50S ribosomal protein L6