HL_5IMR_002
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5IMR|1|4|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_002 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.3236
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5IMR|1|4|G|31
5IMR|1|4|C|32
5IMR|1|4|U|33
5IMR|1|4|C|34
5IMR|1|4|A|35
5IMR|1|4|U|36
5IMR|1|4|A|37
5IMR|1|4|A|38
5IMR|1|4|C|39
Current chains
- Chain 4
- P site- tRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S9
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