HL_5IMR_009

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_009 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.3031

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5IMR|1|A|G|158
5IMR|1|A|G|159
5IMR|1|A|A|160
5IMR|1|A|A|161
5IMR|1|A|A|162
5IMR|1|A|C|163

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Elongation factor 4

Chain X

30S ribosomal protein S20

Chain l

50S ribosomal protein L19