HL_5IMR_013
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_013 not in the Motif Atlas
- Homologous match to HL_5J7L_007
- Geometric discrepancy: 0.2762
- The information below is about HL_5J7L_007
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
5IMR|1|A|U|296
5IMR|1|A|G|297
5IMR|1|A|A|298
5IMR|1|A|G|299
5IMR|1|A|A|300
5IMR|1|A|G|301
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S4
- Chain I
- 30S ribosomal protein S5
- Chain P
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S17
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