HL_5IMR_040
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGGUAGCGG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMR_040 not in the Motif Atlas
- Homologous match to HL_4WF9_002
- Geometric discrepancy: 0.4794
- The information below is about HL_4WF9_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_77600.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5IMR|1|D|C|87
5IMR|1|D|G|88
5IMR|1|D|G|89
5IMR|1|D|U|90
5IMR|1|D|A|91
5IMR|1|D|G|92
5IMR|1|D|C|93
5IMR|1|D|G|94
5IMR|1|D|G|95
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain p
- 50S ribosomal protein L23
- Chain q
- 50S ribosomal protein L24
- Chain t
- 50S ribosomal protein L29
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