HL_5IMR_047

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5IMR|1|D|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_047 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.2625

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

5IMR|1|D|U|305
5IMR|1|D|U|306
5IMR|1|D|G|307
5IMR|1|D|G|308
5IMR|1|D|G|309
5IMR|1|D|A|310
5IMR|1|D|A|311
5IMR|1|D|G|312

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L24