HL_5IMR_067

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCCGCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_067 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3336

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5IMR|1|D|C|1221
5IMR|1|D|C|1222
5IMR|1|D|C|1223
5IMR|1|D|G|1224
5IMR|1|D|C|1225
5IMR|1|D|G|1226
5IMR|1|D|A|1227
5IMR|1|D|G|1228

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L20

Chain n

50S ribosomal protein L21