3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GCCGAAAGGC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IMR_070 not in the Motif Atlas
Geometric match to HL_2Y9H_005
Geometric discrepancy: 0.3281
The information below is about HL_2Y9H_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86870.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

5IMR|1|D|G|1361
5IMR|1|D|C|1362
5IMR|1|D|C|1363
5IMR|1|D|G|1364
5IMR|1|D|A|1365
5IMR|1|D|A|1366
5IMR|1|D|A|1367
5IMR|1|D|G|1368
5IMR|1|D|G|1369
5IMR|1|D|C|1370

Current chains

Chain D
23S ribosomal RNA

Nearby chains

Chain a
50S ribosomal protein L2
Chain v
50S ribosomal protein L31
Chain y
50S ribosomal protein L34

Coloring options:


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