HL_5IMR_073

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5IMR|1|D|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_073 not in the Motif Atlas

Geometric match to HL_5NDH_001

Geometric discrepancy: 0.3612

The information below is about HL_5NDH_001

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5IMR|1|D|G|1492
5IMR|1|D|C|1493
5IMR|1|D|A|1494
5IMR|1|D|A|1495
5IMR|1|D|A|1496
5IMR|1|D|U|1497
5IMR|1|D|C|1498

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2