HL_5IMR_076

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGCAAGAGCA

Length

10 nucleotides

Bulged bases

5IMR|1|D|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_076 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.5497

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5IMR|1|D|U|1629
5IMR|1|D|G|1630
5IMR|1|D|C|1630|||A
5IMR|1|D|A|1631
5IMR|1|D|A|1632
5IMR|1|D|G|1633
5IMR|1|D|A|1634
5IMR|1|D|G|1635
5IMR|1|D|C|1636
5IMR|1|D|A|1637

Current chains

Chain D

23S ribosomal RNA

Nearby chains