HL_5IMR_093

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5IMR|1|D|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_093 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2983

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5IMR|1|D|C|2404
5IMR|1|D|G|2405
5IMR|1|D|U|2406
5IMR|1|D|G|2407
5IMR|1|D|U|2408
5IMR|1|D|G|2409
5IMR|1|D|G|2410
5IMR|1|D|A|2411
5IMR|1|D|A|2412
5IMR|1|D|G|2413

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L15