HL_5IMR_095

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5IMR|1|D|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_095 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.3386

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

5IMR|1|D|U|2528
5IMR|1|D|G|2529
5IMR|1|D|A|2530
5IMR|1|D|A|2531
5IMR|1|D|G|2532
5IMR|1|D|A|2533
5IMR|1|D|A|2534
5IMR|1|D|G|2535

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain C

Elongation factor 4

Chain e

50S ribosomal protein L6