HL_5IMR_122

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMR_122 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2807

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5IMR|1|D|G|2373
5IMR|1|D|C|2374
5IMR|1|D|G|2375
5IMR|1|D|A|2376
5IMR|1|D|A|2377
5IMR|1|D|A|2378
5IMR|1|D|G|2379
5IMR|1|D|C|2380

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L18

Chain s

50S ribosomal protein L27

Chain x

50S ribosomal protein L33