HL_5IT8_006

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5IT8|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0422

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5IT8|1|AA|G|259
5IT8|1|AA|G|260
5IT8|1|AA|U|261
5IT8|1|AA|A|262
5IT8|1|AA|A|263
5IT8|1|AA|C|264
5IT8|1|AA|G|265
5IT8|1|AA|G|266
5IT8|1|AA|C|267

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20