HL_5IT8_021

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

5IT8|1|AA|A|968, 5IT8|1|AA|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.0766

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5IT8|1|AA|G|963
5IT8|1|AA|A|964
5IT8|1|AA|U|965
5IT8|1|AA|2MG|966
5IT8|1|AA|5MC|967
5IT8|1|AA|A|968
5IT8|1|AA|A|969
5IT8|1|AA|C|970
5IT8|1|AA|G|971
5IT8|1|AA|C|972

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AM

30S ribosomal protein S13