HL_5IT8_039

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_039 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0481

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IT8|1|BA|A|320
5IT8|1|BA|A|321
5IT8|1|BA|C|322
5IT8|1|BA|U|323
5IT8|1|BA|G|324
5IT8|1|BA|A|325
5IT8|1|BA|G|326
5IT8|1|BA|A|327
5IT8|1|BA|C|328
5IT8|1|BA|A|329
5IT8|1|BA|C|330
5IT8|1|BA|G|331
5IT8|1|BA|G|332
5IT8|1|BA|U|333

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20