HL_5IT8_055

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5IT8|1|BA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_055 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0569

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5IT8|1|BA|G|1089
5IT8|1|BA|U|1090
5IT8|1|BA|U|1091
5IT8|1|BA|A|1092
5IT8|1|BA|A|1093
5IT8|1|BA|G|1094
5IT8|1|BA|U|1095
5IT8|1|BA|C|1096

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BG

30S ribosomal protein S7