HL_5IT8_062

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

5IT8|1|BA|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_062 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.0718

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IT8|1|BA|G|1515
5IT8|1|BA|2MG|1516
5IT8|1|BA|G|1517
5IT8|1|BA|MA6|1518
5IT8|1|BA|MA6|1519
5IT8|1|BA|C|1520

Current chains

Chain BA

16S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA