HL_5IT8_107

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

5IT8|1|CA|A|1780, 5IT8|1|CA|U|1781, 5IT8|1|CA|U|1782, 5IT8|1|CA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_107 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1261

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5IT8|1|CA|U|1777
5IT8|1|CA|U|1778
5IT8|1|CA|U|1779
5IT8|1|CA|A|1780
5IT8|1|CA|U|1781
5IT8|1|CA|U|1782
5IT8|1|CA|A|1783
5IT8|1|CA|A|1784
5IT8|1|CA|A|1785
5IT8|1|CA|A|1786
5IT8|1|CA|A|1787

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2