HL_5IT8_120

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_120 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.0693

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IT8|1|CA|C|2374
5IT8|1|CA|G|2375
5IT8|1|CA|A|2376
5IT8|1|CA|A|2377
5IT8|1|CA|A|2378
5IT8|1|CA|G|2379

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L33

Chain CP

50S ribosomal protein L18