HL_5IT8_144

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5IT8|1|DA|G|329, 5IT8|1|DA|A|330, 5IT8|1|DA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_144 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0527

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5IT8|1|DA|G|327
5IT8|1|DA|U|328
5IT8|1|DA|G|329
5IT8|1|DA|A|330
5IT8|1|DA|C|331
5IT8|1|DA|A|332
5IT8|1|DA|G|333
5IT8|1|DA|C|334
5IT8|1|DA|C|335

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DV

50S ribosomal protein L24