HL_5IT8_148

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5IT8|1|DA|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_148 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0693

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IT8|1|DA|C|487
5IT8|1|DA|G|488
5IT8|1|DA|G|489
5IT8|1|DA|C|490
5IT8|1|DA|G|491
5IT8|1|DA|A|492
5IT8|1|DA|G|493

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L22