HL_5IT8_181

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

5IT8|1|DA|A|1913, 5IT8|1|DA|C|1914, 5IT8|1|DA|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_181 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0522

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5IT8|1|DA|G|1910
5IT8|1|DA|PSU|1911
5IT8|1|DA|A|1912
5IT8|1|DA|A|1913
5IT8|1|DA|C|1914
5IT8|1|DA|3TD|1915
5IT8|1|DA|A|1916
5IT8|1|DA|PSU|1917
5IT8|1|DA|A|1918
5IT8|1|DA|A|1919
5IT8|1|DA|C|1920

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA