HL_5IT8_185

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

5IT8|1|DA|A|2211, 5IT8|1|DA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_185 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.095

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

5IT8|1|DA|G|2209
5IT8|1|DA|U|2210
5IT8|1|DA|A|2211
5IT8|1|DA|A|2212
5IT8|1|DA|U|2213
5IT8|1|DA|C|2214
5IT8|1|DA|C|2215

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2