HL_5IT8_188

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_188 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.0514

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5IT8|1|DA|G|2303
5IT8|1|DA|G|2304
5IT8|1|DA|U|2305
5IT8|1|DA|C|2306
5IT8|1|DA|G|2307
5IT8|1|DA|G|2308
5IT8|1|DA|A|2309
5IT8|1|DA|C|2310
5IT8|1|DA|A|2311
5IT8|1|DA|U|2312
5IT8|1|DA|C|2313

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5