HL_5IT8_189

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_189 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0507

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5IT8|1|DA|U|2324
5IT8|1|DA|G|2325
5IT8|1|DA|C|2326
5IT8|1|DA|A|2327
5IT8|1|DA|A|2328
5IT8|1|DA|U|2329
5IT8|1|DA|G|2330
5IT8|1|DA|G|2331

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DF

50S ribosomal protein L5

Chain DN

50S ribosomal protein L16

Chain DX

50S ribosomal protein L27