HL_5IT8_204
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GUCUC
- Length
- 5 nucleotides
- Bulged bases
- 5IT8|1|DB|U|87, 5IT8|1|DB|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IT8_204 not in the Motif Atlas
- Homologous match to HL_5J7L_204
- Geometric discrepancy: 0.0786
- The information below is about HL_5J7L_204
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
5IT8|1|DB|G|86
5IT8|1|DB|U|87
5IT8|1|DB|C|88
5IT8|1|DB|U|89
5IT8|1|DB|C|90
Current chains
- Chain DB
- 5S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L30
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DN
- 50S ribosomal protein L16
- Chain DW
- 50S ribosomal protein L25
Coloring options: