HL_5IT8_215

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5IT8|1|DA|U|958, 5IT8|1|DA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT8_215 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0585

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5IT8|1|DA|PSU|955
5IT8|1|DA|G|956
5IT8|1|DA|C|957
5IT8|1|DA|U|958
5IT8|1|DA|A|959
5IT8|1|DA|A|960
5IT8|1|DA|C|961
5IT8|1|DA|G|962

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16