HL_5IT9_008

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5IT9|1|2|G|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0967

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5IT9|1|2|G|329
5IT9|1|2|A|330
5IT9|1|2|U|331
5IT9|1|2|A|332
5IT9|1|2|G|333
5IT9|1|2|U|334
5IT9|1|2|G|335
5IT9|1|2|G|336
5IT9|1|2|C|337

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17