HL_5IT9_026

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5IT9|1|2|A|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IT9_026 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1752

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5IT9|1|2|G|1187
5IT9|1|2|A|1188
5IT9|1|2|C|1189
5IT9|1|2|U|1190
5IT9|1|2|C|1191
5IT9|1|2|A|1192
5IT9|1|2|A|1193
5IT9|1|2|C|1194
5IT9|1|2|A|1195
5IT9|1|2|C|1196

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein uS9

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein eS29

Chain f

Ribosomal protein eS31