HL_5IWA_026

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

5IWA|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IWA_026 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.2539

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5IWA|1|A|G|1133
5IWA|1|A|G|1134
5IWA|1|A|U|1135
5IWA|1|A|U|1136
5IWA|1|A|C|1137
5IWA|1|A|G|1138
5IWA|1|A|G|1139
5IWA|1|A|C|1140
5IWA|1|A|C|1141

Current chains

Chain A

16S ribosomal RNA

Nearby chains