HL_5J30_102

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5J30|1|RA|G|2751, 5J30|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_102 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0586

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5J30|1|RA|C|2745
5J30|1|RA|U|2746
5J30|1|RA|G|2747
5J30|1|RA|A|2748
5J30|1|RA|A|2749
5J30|1|RA|A|2750
5J30|1|RA|G|2751
5J30|1|RA|C|2752
5J30|1|RA|A|2753
5J30|1|RA|U|2754
5J30|1|RA|C|2755
5J30|1|RA|U|2756
5J30|1|RA|A|2757
5J30|1|RA|A|2758
5J30|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6