HL_5J3C_006

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5J3C|1|QA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0771

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5J3C|1|QA|G|259
5J3C|1|QA|G|260
5J3C|1|QA|U|261
5J3C|1|QA|A|262
5J3C|1|QA|A|263
5J3C|1|QA|U|264
5J3C|1|QA|G|265
5J3C|1|QA|G|266
5J3C|1|QA|C|267

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20