HL_5J3C_080
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5J3C|1|RA|A|1780, 5J3C|1|RA|C|1781, 5J3C|1|RA|C|1782, 5J3C|1|RA|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J3C_080 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0517
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5J3C|1|RA|U|1777
5J3C|1|RA|U|1778
5J3C|1|RA|U|1779
5J3C|1|RA|A|1780
5J3C|1|RA|C|1781
5J3C|1|RA|C|1782
5J3C|1|RA|A|1783
5J3C|1|RA|A|1784
5J3C|1|RA|A|1785
5J3C|1|RA|A|1786
5J3C|1|RA|A|1787
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RD
- 50S ribosomal protein L2
- Chain RW
- 50S ribosomal protein L22
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