HL_5J3C_101

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5J3C|1|RA|G|2751, 5J3C|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_101 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0645

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5J3C|1|RA|C|2745
5J3C|1|RA|U|2746
5J3C|1|RA|G|2747
5J3C|1|RA|A|2748
5J3C|1|RA|A|2749
5J3C|1|RA|A|2750
5J3C|1|RA|G|2751
5J3C|1|RA|C|2752
5J3C|1|RA|A|2753
5J3C|1|RA|U|2754
5J3C|1|RA|C|2755
5J3C|1|RA|U|2756
5J3C|1|RA|A|2757
5J3C|1|RA|A|2758
5J3C|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13