HL_5J4B_156

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5J4B|1|2A|A|1780, 5J4B|1|2A|C|1781, 5J4B|1|2A|C|1782, 5J4B|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_156 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0494

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5J4B|1|2A|U|1777
5J4B|1|2A|U|1778
5J4B|1|2A|U|1779
5J4B|1|2A|A|1780
5J4B|1|2A|C|1781
5J4B|1|2A|C|1782
5J4B|1|2A|A|1783
5J4B|1|2A|A|1784
5J4B|1|2A|A|1785
5J4B|1|2A|A|1786
5J4B|1|2A|A|1787

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22