HL_5J4B_177

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5J4B|1|2A|G|2751, 5J4B|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_177 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0956

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5J4B|1|2A|C|2745
5J4B|1|2A|U|2746
5J4B|1|2A|G|2747
5J4B|1|2A|A|2748
5J4B|1|2A|A|2749
5J4B|1|2A|A|2750
5J4B|1|2A|G|2751
5J4B|1|2A|C|2752
5J4B|1|2A|A|2753
5J4B|1|2A|U|2754
5J4B|1|2A|C|2755
5J4B|1|2A|U|2756
5J4B|1|2A|A|2757
5J4B|1|2A|A|2758
5J4B|1|2A|G|2759

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6