HL_5J4D_006
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 5J4D|1|A|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_006 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.147
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5J4D|1|A|G|259
5J4D|1|A|G|260
5J4D|1|A|U|261
5J4D|1|A|A|262
5J4D|1|A|A|263
5J4D|1|A|U|264
5J4D|1|A|G|265
5J4D|1|A|G|266
5J4D|1|A|C|267
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein S20
- Chain ZA
- 30S ribosomal protein S17
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